This is a collection of select free software and source code that I’ve posted on this site.
In general, I classify Software Snippets to be small objects that stand-alone, can be downloaded then be compiled or run immediately and can be included as a library to other software.
Items posted here are licensed under Creative Commons Attribution 3.0 Unported.
All code is provided as-is, without any warrantee expressed or implied.
Feel free to contact me, as I’m always happy to offer my support.
Visualization and Image Processing Projects
Fuzzy C-Means Greylevel Segmentation — Python — 2011.04.20
Heatmap Renderer — C# — 2011.01.21
Bioinformatics and Phylogeny Projects
- A Newick string parser and SVG renderer using JS in XHTML. Compatible for Mozilla and WebKit family of renderers. Users may click on phylogeny tree nodes to display the multiple sequence alignment at that node along with other information. An included Python script within the tgz is used to make the data compatible with the viewer.
- Download here: ( auto_phylo_diagram.tgz — Python script, makefile, IL-1 data, JS renderer, demo xhtml )
- More information: Simple Interactive Phylogenetic Tree Sketches JS+SVG+XHTML
- Download here: ( editStringAdder.rb — Ruby implementation | editStrings.js — JS implementation )