Storm 20101017 BioCompiler
From SnOwy - Ed's Wiki Notebook
This is the brainstorm log for the BioCompiler meeting set to happen tomorrow. I've not finished auditing the projects I've been assigned. These audits will appear linked below. I would like to remark on the two teams that have contacted us with respect to their own modelling and CAD projects.
This is part of the BioCompiler (Workflow 20101002 BioCompiler) thread.
The active copy of this page will be moved to igem.uwaterloo.ca.
Contents |
Related Work 2010
USTC Software MoDeL
- http://2010.igem.org/Team:USTC_Software/MoDeL
- Chain-Node model
- Since function can be thought to be a subnode of a biological pathway graph, show function as a physical object in a graph involving a DNA pathway
METU Turkey Software
- http://2010.igem.org/Team:METU_Turkey_Software
- Interested in Parts Registry standardization
- Human practices oriented; worth noting (standards, exchange formats etc.)
Brain Storm
Abstraction
- BioCompiler : Description → Circuit
- Circuit : Reactants → Products
- BioCompiler : Circuit → Protocol
What else can / should / might BioCompiler do?
- Recommend new projects based on a parsimony fitness criterion?
Homework
- Note: Matthew has sent a Google Doc.
- Note: Fiona has sent a Google Doc.
- need to convert mine from paper to typing.
Brain Farts
Minecraft for Circuit Modelling
http://gizmodo.com/5661855/geeky-gamers-build-working-computers-out-of-virtual-blocks Kind of relates to what we're doing, eh? Meant as a brain-break at some point through out your day! -- --Fiona
